A Collection of Amino Acid Replacement Matrices Derived from Clusters of Orthologs
Sequence divergence among orthologous proteins was characterized with 34 amino acid replacement matrices, sequence context analysis, and a phylogenetic tree. The model was trained on very large datasets of aligned protein sequences drawn from 15 organisms including protists, plants, Dictyostelium, f...
|Published in:||Journal of Molecular Evolution, Vol. 61, No. 5 (2005), p. 659-665|
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|Item Description:||[ Reviewing Editor : Dr. Martin Kreitman] Electronic Supplementary material is available for this article at http://dx.doi.org/10.1007/s00239-005-0060-0 and accessible for authorised users.|
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